most recent changes, diff for ncbi_tools

Index: science/ncbi_tools/Portfile --- science/ncbi_tools/Portfile (revision 33350) +++ science/ncbi_tools/Portfile (revision 33351) @@ -1,7 +1,7 @@ # $Id$ PortSystem 1.0 name ncbi_tools -version 20061015 +version 20070826 description blast is a set of tools for doing nucleotide and protein searches maintainers michael.thon@yahoo.com categories science @@ -10,14 +10,43 @@ fetch.use_epsv no master_sites ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/ distfiles ncbi.tar.gz -checksums md5 8eca84753fd7a1d39bab256a4944f65e +checksums md5 c17f7b08c12823e4320661894110dcb1 +dist_subdir ${name}/${version} worksrcdir use_configure no build.cmd './ncbi/make/makedis.csh' build.target -set binaries "Psequin asn2ff asn2gb asn2idx asn2xml asndhuff asntool bl2bag.cgi bl2seq blast blast.REAL blast_cs.REAL blastall blastcl3 blastclust blastpgp cdscan checksub copymat ddv debruijn demo_regexp demo_regexp_grep dosimple entrcmd entrez2 errhdr fa2htgs fastacmd findspl formatdb formatrpsdb getfeat getmesh getpub getseq gil2bin idfetch impala indexpub makemat makeset megablast ncbisort nph-viewgif.cgi psiblast.REAL psiblast_cs.REAL rpsblast seedtop seqtest tbl2asn test_regexp testcore testobj testval udv vecscreen wblast2.REAL wblast2_cs.REAL" +set binaries "Psequin blastclust findspl psiblast.REAL \ +asn2ff blastpgp formatdb psiblast_cs.REAL \ +asn2gb cdscan formatrpsdb rpsblast \ +asn2idx checksub gene2xml sbtedit \ +asn2xml copymat getmesh seedtop \ +asndhuff ddv getpub seqtest \ +asntool debruijn gil2bin tbl2asn \ +bl2bag.cgi demo_regexp idfetch test_regexp \ +bl2seq demo_regexp_grep impala testcore \ +blast dosimple indexpub testobj \ +blast.REAL entrcmd makemat testval \ +blast_cs.REAL entrez2 makeset udv \ +blastall errhdr megablast vecscreen \ +blastall_old fa2htgs ncbisort wblast2.REAL \ +blastcl3 fastacmd nph-viewgif.cgi wblast2_cs.REAL" -set manpages "Nentrez.1 Psequin.1 asn2asn.1 asn2ff.1 asn2gb.1 asn2xml.1 asndhuff.1 asntool.1 bl2seq.1 blast.1 blastall.1 blastcl3.1 blastclust.1 blastpgp.1 cdscan.1 checksub.1 copymat.1 ddv.1 debruijn.1 entrcmd.1 entrez2.1 errhdr.1 fa2htgs.1 fastacmd.1 findspl.1 fmerge.1 formatdb.1 gbseqget.1 getfeat.1 getmesh.1 getpub.1 gil2bin.1 idfetch.1 impala.1 indexpub.1 makemat.1 makeset.1 megablast.1 netentcf.1 rpsblast.1 seedtop.1 tbl2asn.1 udv.1 vecscreen.1" +set manpages " Nentrez.1 blastall_old.1 findspl.1 makeset.1 \ +Psequin.1 blastcl3.1 fmerge.1 megablast.1 \ +asn2all.1 blastclust.1 formatdb.1 netentcf.1 \ +asn2asn.1 blastpgp.1 formatrpsdb.1 nps2gps.1 \ +asn2ff.1 cdscan.1 gbseqget.1 rpsblast.1 \ +asn2fsa.1 checksub.1 gene2xml.1 sbtedit.1 \ +asn2gb.1 cleanasn.1 getfeat.1 seedtop.1 \ +asn2idx.1 copymat.1 getmesh.1 sortbyquote.1 \ +asn2xml.1 ddv.1 getpub.1 spidey.1 \ +asndhuff.1 debruijn.1 gil2bin.1 tbl2asn.1 \ +asntool.1 entrcmd.1 idfetch.1 trna2sap.1 \ +asnval.1 entrez2.1 impala.1 trna2tbl.1 \ +bl2seq.1 errhdr.1 indexpub.1 udv.1 \ +blast.1 fa2htgs.1 insdseqget.1 vecscreen.1 \ +blastall.1 fastacmd.1 makemat.1" destroot {